@COMMENT
LIGANDBOX_ID = D09647-02
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D09647
NAME = Omadacycline_(USAN)
MOLECULAR_FORMULA = C29H40N4O7
MOLECULAR_WEIGHT = 556.660
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 7
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 4
TPSA = 176.6600
HOMO = -13.2386
LUMO = -6.4769
mLOGS = -0.292
mLOGD = -0.289
mLOGPA = -4.762
@MOLECULE
D09647-02
82 85 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 2.1527 -1.7319 -2.7869 C.ar 1 LGD -0.2039
2 C2 2.3390 -0.3437 -2.8446 C.ar 1 LGD -0.1090
3 C3 1.5487 0.5234 -2.0761 C.ar 1 LGD 0.1413
4 C4 0.5270 -0.0080 -1.2508 C.ar 1 LGD 0.0134
5 C5 0.3286 -1.4087 -1.1754 C.ar 1 LGD -0.2376
6 C6 1.1544 -2.2655 -1.9507 C.ar 1 LGD 0.2209
7 C7 -0.3909 0.9160 -0.4477 C.3 1 LGD -0.0322
8 C8 -1.8283 0.3609 -0.4159 C.3 1 LGD -0.0030
9 C9 -1.8135 -1.0230 0.2643 C.2 1 LGD -0.2685
10 C10 -0.7364 -1.9617 -0.2379 C.2 1 LGD 0.6156
11 C11 -2.8290 1.3860 0.2051 C.3 1 LGD -0.0838
12 C12 -3.1844 1.0324 1.6641 C.3 1 LGD -0.1205
13 C13 -3.7787 -0.4009 1.7507 C.3 1 LGD 0.0460
14 C14 -2.7008 -1.3720 1.2462 C.2 1 LGD 0.1464
15 C15 -4.0702 2.0748 2.3906 C.3 1 LGD 0.1236
16 C16 -4.0905 1.6737 3.8582 C.2 1 LGD 0.0915
17 C17 -4.1404 0.3679 4.2575 C.2 1 LGD -0.2066
18 C18 -4.2982 -0.6980 3.1952 C.2 1 LGD 0.5687
19 C19 3.0432 -2.6483 -3.6245 C.3 1 LGD 0.1743
20 N1 4.4639 -2.3114 -3.4046 N.4 1 LGD -0.7431
21 C20 4.8915 -2.6204 -2.0243 C.3 1 LGD 0.1042
22 C21 6.3191 -2.0722 -1.7518 C.3 1 LGD -0.0815
23 C22 6.7068 -2.4304 -0.2938 C.3 1 LGD -0.0987
24 C23 7.3447 -2.7192 -2.7239 C.3 1 LGD -0.0987
25 C24 6.3360 -0.5264 -1.9165 C.3 1 LGD -0.0987
26 O1 -0.6886 -3.1293 0.1127 O.2 1 LGD -0.5040
27 O2 -2.7112 -2.5792 1.8362 O.3 1 LGD -0.4315
28 O3 0.9930 -3.6223 -1.9107 O.3 1 LGD -0.5061
29 O4 -4.7994 -1.7800 3.4558 O.2 1 LGD -0.3951
30 O5 -4.9096 -0.5247 0.8783 O.3 1 LGD -0.5986
31 N2 -5.4259 2.1497 1.7773 N.4 1 LGD -0.6764
32 C25 -4.1503 -0.0344 5.7178 C.2 1 LGD 0.6681
33 N3 -4.1191 0.8929 6.7371 N.am 1 LGD -0.6727
34 O6 -4.1705 -1.1977 6.0746 O.2 1 LGD -0.5374
35 N4 1.8009 1.8949 -2.1296 N.pl3 1 LGD -0.7558
36 C26 1.8670 2.6004 -3.4199 C.3 1 LGD 0.2135
37 C27 2.5396 2.5466 -1.0360 C.3 1 LGD 0.2135
38 O7 -3.9948 2.7297 4.6821 O.3 1 LGD -0.4560
39 C28 -6.5468 2.2597 2.7383 C.3 1 LGD 0.0862
40 C29 -5.4997 3.3159 0.8729 C.3 1 LGD 0.0862
41 H1 3.1164 0.0675 -3.4822 H 1 LGD 0.1329
42 H2 -0.4184 1.9209 -0.8863 H 1 LGD 0.0732
43 H3 -0.0108 1.0263 0.5760 H 1 LGD 0.0732
44 H4 -2.1358 0.2207 -1.4611 H 1 LGD 0.0802
45 H5 -3.7395 1.4055 -0.4069 H 1 LGD 0.0536
46 H6 -2.4196 2.4035 0.1623 H 1 LGD 0.0536
47 H7 -2.2312 1.0225 2.2121 H 1 LGD 0.1197
48 H8 -3.5989 3.0552 2.2987 H 1 LGD 0.1113
49 H9 2.8124 -2.5203 -4.6838 H 1 LGD 0.1166
50 H10 2.8842 -3.6966 -3.3648 H 1 LGD 0.1166
51 H11 5.0389 -2.8331 -4.0514 H 1 LGD 0.4502
52 H12 4.8721 -3.7020 -1.8768 H 1 LGD 0.1075
53 H13 4.1918 -2.1616 -1.3229 H 1 LGD 0.1075
54 H14 7.7093 -2.0559 -0.0487 H 1 LGD 0.0537
55 H15 6.7074 -3.5177 -0.1428 H 1 LGD 0.0537
56 H16 5.9989 -1.9907 0.4207 H 1 LGD 0.0537
57 H17 8.3662 -2.3926 -2.4899 H 1 LGD 0.0537
58 H18 7.1389 -2.4432 -3.7659 H 1 LGD 0.0537
59 H19 7.3160 -3.8141 -2.6520 H 1 LGD 0.0537
60 H20 5.5765 -0.0563 -1.2783 H 1 LGD 0.0537
61 H21 6.1339 -0.2315 -2.9540 H 1 LGD 0.0537
62 H22 7.3141 -0.1129 -1.6389 H 1 LGD 0.0537
63 H23 -3.4889 -2.6220 2.4227 H 1 LGD 0.4670
64 H24 0.3201 -3.8201 -1.2312 H 1 LGD 0.4835
65 H25 -4.5651 -0.6089 -0.0292 H 1 LGD 0.4485
66 H26 -4.0890 1.8783 6.5205 H 1 LGD 0.3368
67 H27 -4.1174 0.5778 7.6957 H 1 LGD 0.3368
68 H28 2.8895 2.5751 -3.8174 H 1 LGD 0.0405
69 H29 1.5583 3.6461 -3.2960 H 1 LGD 0.0405
70 H30 1.1913 2.1287 -4.1446 H 1 LGD 0.0405
71 H31 2.1102 3.5339 -0.8250 H 1 LGD 0.0405
72 H32 3.5963 2.6645 -1.3075 H 1 LGD 0.0405
73 H33 2.4783 1.9433 -0.1213 H 1 LGD 0.0405
74 H34 -3.9798 3.5393 4.1424 H 1 LGD 0.4442
75 H35 -6.5756 1.3703 3.3707 H 1 LGD 0.1061
76 H36 -7.4895 2.3387 2.1935 H 1 LGD 0.1061
77 H37 -6.4143 3.1448 3.3628 H 1 LGD 0.1061
78 H38 -6.4634 3.3225 0.3601 H 1 LGD 0.1061
79 H39 -4.6995 3.2654 0.1331 H 1 LGD 0.1061
80 H40 -5.3946 4.2350 1.4525 H 1 LGD 0.1061
81 H41 4.5956 -1.3251 -3.5761 H 1 LGD 0.4502
82 H42 -5.5628 1.3032 1.2364 H 1 LGD 0.4800
@BOND
1 1 2 ar
2 2 3 ar
3 3 4 ar
4 4 5 ar
5 5 6 ar
6 1 6 ar
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 5 10 1
12 8 11 1
13 11 12 1
14 12 13 1
15 13 14 1
16 9 14 2
17 12 15 1
18 15 16 1
19 16 17 2
20 17 18 1
21 13 18 1
22 1 19 1
23 19 20 1
24 20 21 1
25 21 22 1
26 22 23 1
27 22 24 1
28 22 25 1
29 10 26 2
30 14 27 1
31 6 28 1
32 18 29 2
33 13 30 1
34 15 31 1
35 17 32 1
36 32 33 am
37 32 34 2
38 3 35 1
39 35 36 1
40 35 37 1
41 16 38 1
42 31 39 1
43 31 40 1
44 2 41 1
45 7 42 1
46 7 43 1
47 8 44 1
48 11 45 1
49 11 46 1
50 12 47 1
51 15 48 1
52 19 49 1
53 19 50 1
54 20 51 1
55 21 52 1
56 21 53 1
57 23 54 1
58 23 55 1
59 23 56 1
60 24 57 1
61 24 58 1
62 24 59 1
63 25 60 1
64 25 61 1
65 25 62 1
66 27 63 1
67 28 64 1
68 30 65 1
69 33 66 1
70 33 67 1
71 36 68 1
72 36 69 1
73 36 70 1
74 37 71 1
75 37 72 1
76 37 73 1
77 38 74 1
78 39 75 1
79 39 76 1
80 39 77 1
81 40 78 1
82 40 79 1
83 40 80 1
84 20 81 1
85 31 82 1