@COMMENT
LIGANDBOX_ID = D09647-03
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D09647
NAME = Omadacycline_(USAN)
MOLECULAR_FORMULA = C29H40N4O7
MOLECULAR_WEIGHT = 556.660
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 7
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 4
TPSA = 176.6600
HOMO = -13.2386
LUMO = -6.4769
mLOGS = -0.292
mLOGD = -0.289
mLOGPA = -4.762
@MOLECULE
D09647-03
82 85 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -3.4378 -1.2683 -1.3491 C.ar 1 LGD -0.2031
2 C2 -3.2958 0.1264 -1.3890 C.ar 1 LGD -0.1086
3 C3 -2.0467 0.7306 -1.1858 C.ar 1 LGD 0.1390
4 C4 -0.9059 -0.0803 -0.9716 C.ar 1 LGD 0.0118
5 C5 -1.0328 -1.4913 -0.9164 C.ar 1 LGD -0.2346
6 C6 -2.3124 -2.0763 -1.1021 C.ar 1 LGD 0.2219
7 C7 0.4831 0.5463 -0.8332 C.3 1 LGD -0.0320
8 C8 1.5382 -0.3506 -1.5102 C.3 1 LGD -0.0062
9 C9 1.5585 -1.6968 -0.7834 C.2 1 LGD -0.2800
10 C10 0.1980 -2.3382 -0.6196 C.2 1 LGD 0.6163
11 C11 2.9253 0.3435 -1.6093 C.3 1 LGD -0.0929
12 C12 3.8379 0.0097 -0.3773 C.3 1 LGD -0.0871
13 C13 4.0784 -1.5427 -0.4226 C.3 1 LGD 0.0656
14 C14 2.7090 -2.2498 -0.3005 C.2 1 LGD 0.1555
15 C15 5.2095 0.7766 -0.2656 C.3 1 LGD 0.1381
16 C16 5.9471 0.2649 1.0014 C.2 1 LGD 0.0492
17 C17 5.8240 -1.0093 1.4763 C.2 1 LGD -0.1564
18 C18 5.1227 -2.0251 0.6227 C.2 1 LGD 0.5806
19 C19 -4.8159 -1.8929 -1.5583 C.3 1 LGD 0.1738
20 N1 -5.8012 -1.2457 -0.6700 N.4 1 LGD -0.7428
21 C20 -5.5128 -1.5245 0.7520 C.3 1 LGD 0.1039
22 C21 -6.4248 -0.6770 1.6793 C.3 1 LGD -0.0815
23 C22 -6.0814 -1.0319 3.1490 C.3 1 LGD -0.0987
24 C23 -7.9213 -1.0008 1.4131 C.3 1 LGD -0.0987
25 C24 -6.1606 0.8371 1.4463 C.3 1 LGD -0.0987
26 O1 0.0692 -3.4852 -0.2240 O.2 1 LGD -0.5038
27 O2 2.7298 -3.4380 0.3263 O.3 1 LGD -0.4374
28 O3 -2.4779 -3.4324 -1.0550 O.3 1 LGD -0.5059
29 O4 5.3798 -3.2145 0.7291 O.2 1 LGD -0.3951
30 O5 4.6505 -1.9045 -1.6859 O.3 1 LGD -0.5641
31 N2 5.1507 2.2766 -0.1453 N.4 1 LGD -0.6869
32 C25 6.4931 -1.4788 2.7601 C.2 1 LGD 0.6637
33 N3 7.2384 -0.6438 3.5648 N.am 1 LGD -0.6728
34 O6 6.3885 -2.6185 3.1743 O.2 1 LGD -0.5308
35 N4 -1.9581 2.1235 -1.1869 N.pl3 1 LGD -0.7594
36 C26 -2.4953 2.9148 -2.3055 C.3 1 LGD 0.2153
37 C27 -1.8427 2.8547 0.0855 C.3 1 LGD 0.2153
38 O7 6.7001 1.1924 1.6251 O.3 1 LGD -0.4802
39 C28 3.9187 3.0319 -0.4419 C.3 1 LGD 0.0864
40 C29 6.2218 2.8637 -0.9803 C.3 1 LGD 0.0864
41 H1 -4.1672 0.7505 -1.5655 H 1 LGD 0.1323
42 H2 0.5156 1.5385 -1.2990 H 1 LGD 0.0632
43 H3 0.7309 0.6842 0.2272 H 1 LGD 0.0632
44 H4 1.2001 -0.5203 -2.5415 H 1 LGD 0.0858
45 H5 3.4154 0.0401 -2.5422 H 1 LGD 0.0573
46 H6 2.7424 1.4044 -1.7562 H 1 LGD 0.0573
47 H7 3.2721 0.2416 0.5354 H 1 LGD 0.0845
48 H8 5.7944 0.5290 -1.1538 H 1 LGD 0.1374
49 H9 -5.1317 -1.7552 -2.5941 H 1 LGD 0.1173
50 H10 -4.7985 -2.9635 -1.3458 H 1 LGD 0.1173
51 H11 -6.7282 -1.5821 -0.8906 H 1 LGD 0.4502
52 H12 -5.6663 -2.5877 0.9465 H 1 LGD 0.1077
53 H13 -4.4686 -1.2810 0.9586 H 1 LGD 0.1077
54 H14 -6.6995 -0.4552 3.8494 H 1 LGD 0.0535
55 H15 -6.2537 -2.0979 3.3462 H 1 LGD 0.0535
56 H16 -5.0284 -0.8139 3.3700 H 1 LGD 0.0535
57 H17 -8.5696 -0.4673 2.1202 H 1 LGD 0.0535
58 H18 -8.2213 -0.7045 0.3999 H 1 LGD 0.0535
59 H19 -8.1150 -2.0757 1.5225 H 1 LGD 0.0535
60 H20 -5.0962 1.0733 1.5744 H 1 LGD 0.0535
61 H21 -6.4543 1.1443 0.4346 H 1 LGD 0.0535
62 H22 -6.7307 1.4487 2.1575 H 1 LGD 0.0535
63 H23 3.6624 -3.6791 0.4801 H 1 LGD 0.4706
64 H24 -1.6223 -3.8258 -0.7964 H 1 LGD 0.4852
65 H25 3.9635 -1.7777 -2.3640 H 1 LGD 0.4356
66 H26 7.3641 0.3239 3.3087 H 1 LGD 0.3348
67 H27 7.6495 -1.0088 4.4109 H 1 LGD 0.3348
68 H28 -3.5494 3.1618 -2.1274 H 1 LGD 0.0393
69 H29 -1.9248 3.8452 -2.4192 H 1 LGD 0.0393
70 H30 -2.4149 2.3488 -3.2423 H 1 LGD 0.0393
71 H31 -1.1467 3.6960 -0.0232 H 1 LGD 0.0393
72 H32 -2.8234 3.2374 0.3954 H 1 LGD 0.0393
73 H33 -1.4601 2.1932 0.8731 H 1 LGD 0.0393
74 H34 7.0245 1.8177 0.9545 H 1 LGD 0.4256
75 H35 3.0705 2.5816 0.0767 H 1 LGD 0.1076
76 H36 4.0366 4.0646 -0.1083 H 1 LGD 0.1076
77 H37 3.7404 3.0344 -1.5184 H 1 LGD 0.1076
78 H38 6.2706 3.9416 -0.8135 H 1 LGD 0.1076
79 H39 7.1838 2.4166 -0.7240 H 1 LGD 0.1076
80 H40 6.0096 2.6718 -2.0339 H 1 LGD 0.1076
81 H41 -5.7726 -0.2479 -0.8223 H 1 LGD 0.4502
82 H42 5.3487 2.4814 0.8258 H 1 LGD 0.4540
@BOND
1 1 2 ar
2 2 3 ar
3 3 4 ar
4 4 5 ar
5 5 6 ar
6 1 6 ar
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 5 10 1
12 8 11 1
13 11 12 1
14 12 13 1
15 13 14 1
16 9 14 2
17 12 15 1
18 15 16 1
19 16 17 2
20 17 18 1
21 13 18 1
22 1 19 1
23 19 20 1
24 20 21 1
25 21 22 1
26 22 23 1
27 22 24 1
28 22 25 1
29 10 26 2
30 14 27 1
31 6 28 1
32 18 29 2
33 13 30 1
34 15 31 1
35 17 32 1
36 32 33 am
37 32 34 2
38 3 35 1
39 35 36 1
40 35 37 1
41 16 38 1
42 31 39 1
43 31 40 1
44 2 41 1
45 7 42 1
46 7 43 1
47 8 44 1
48 11 45 1
49 11 46 1
50 12 47 1
51 15 48 1
52 19 49 1
53 19 50 1
54 20 51 1
55 21 52 1
56 21 53 1
57 23 54 1
58 23 55 1
59 23 56 1
60 24 57 1
61 24 58 1
62 24 59 1
63 25 60 1
64 25 61 1
65 25 62 1
66 27 63 1
67 28 64 1
68 30 65 1
69 33 66 1
70 33 67 1
71 36 68 1
72 36 69 1
73 36 70 1
74 37 71 1
75 37 72 1
76 37 73 1
77 38 74 1
78 39 75 1
79 39 76 1
80 39 77 1
81 40 78 1
82 40 79 1
83 40 80 1
84 20 81 1
85 31 82 1