@COMMENT
LIGANDBOX_ID = D09936-02
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D09936
NAME = Navitoclax_dihydrochloride_(USAN)
MOLECULAR_FORMULA = C47H55N5O6F3S3Cl
MOLECULAR_WEIGHT = 974.628
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 2
NUM_OF_ACCEPTOR = 6
NUM_OF_CHIRAL_ATOMS = 1
TPSA = 128.3600
HOMO = -11.5942
LUMO = -5.8312
mLOGS = -5.175
mLOGPA = -4.407
mLOGD = 3.476
@MOLECULE
D09936-02
122 128 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -0.0055 3.9500 5.1747 C.3 1 LGD 0.1020
2 N1 -1.0252 4.3893 6.1603 N.4 1 LGD -0.6613
3 C2 -2.3854 4.1611 5.6121 C.3 1 LGD 0.1020
4 C3 -2.6155 2.6760 5.2278 C.3 1 LGD 0.2077
5 N2 -1.5646 2.1995 4.3039 N.pl3 1 LGD -0.7306
6 C4 -0.1902 2.4639 4.7710 C.3 1 LGD 0.2077
7 C5 -1.8298 1.1244 3.4516 C.ar 1 LGD 0.1692
8 C6 -0.8664 3.7456 7.4837 C.3 1 LGD 0.1547
9 C7 0.3861 4.2722 8.1649 C.2 1 LGD -0.2200
10 C8 0.2141 5.6716 8.7448 C.3 1 LGD -0.0289
11 C9 1.5658 6.3946 9.0089 C.3 1 LGD -0.0463
12 C10 2.5119 5.4084 9.7521 C.3 1 LGD -0.0727
13 C11 2.7938 4.1238 8.9375 C.3 1 LGD -0.0455
14 C12 1.5383 3.5585 8.2722 C.2 1 LGD 0.0421
15 C13 1.6575 2.1923 7.7069 C.ar 1 LGD -0.1084
16 C14 2.5540 1.9434 6.6505 C.ar 1 LGD -0.1174
17 C15 2.6442 0.6609 6.0858 C.ar 1 LGD -0.1172
18 C16 1.8445 -0.3804 6.5822 C.ar 1 LGD 0.0315
19 C17 0.9654 -0.1452 7.6510 C.ar 1 LGD -0.1172
20 C18 0.8756 1.1375 8.2149 C.ar 1 LGD -0.1174
21 C19 -2.8638 1.2178 2.5041 C.ar 1 LGD -0.1691
22 C20 -3.1389 0.1495 1.6368 C.ar 1 LGD -0.0538
23 C21 -2.3853 -1.0401 1.6993 C.ar 1 LGD -0.1579
24 C22 -1.3504 -1.1364 2.6529 C.ar 1 LGD -0.0538
25 C23 -1.0766 -0.0651 3.5185 C.ar 1 LGD -0.1691
26 C24 -2.6917 -2.1722 0.7499 C.2 1 LGD 0.7027
27 N3 -1.8962 -3.3083 0.7639 N.am 1 LGD -0.6265
28 S1 -2.0914 -4.6345 -0.3321 S.O2 1 LGD 1.2445
29 C25 -1.5158 -3.9352 -1.8886 C.ar 1 LGD -0.2895
30 O1 -3.6176 -2.0925 -0.0378 O.2 1 LGD -0.5514
31 C26 2.1933 6.8645 7.6621 C.3 1 LGD -0.0878
32 C27 1.3216 7.6408 9.9043 C.3 1 LGD -0.0878
33 Cl1 1.9410 -1.9745 5.8641 Cl 1 LGD -0.0797
34 C28 -0.1616 -4.0347 -2.2350 C.ar 1 LGD 0.0422
35 C29 0.2954 -3.4644 -3.4281 C.ar 1 LGD -0.2292
36 C30 -0.5858 -2.7844 -4.2870 C.ar 1 LGD 0.2641
37 C31 -1.9520 -2.6481 -3.9285 C.ar 1 LGD -0.2583
38 C32 -2.4037 -3.2481 -2.7346 C.ar 1 LGD 0.0963
39 O2 -3.5323 -4.8766 -0.4504 O.2 1 LGD -0.5396
40 O3 -1.1358 -5.6362 0.1483 O.2 1 LGD -0.5396
41 S2 -3.1651 -1.6396 -4.8377 S.O2 1 LGD 1.0038
42 C33 -3.1855 -0.0857 -3.8876 C.3 1 LGD 0.5975
43 O4 -4.4839 -2.2561 -4.6574 O.2 1 LGD -0.5213
44 O5 -2.6812 -1.2958 -6.1780 O.2 1 LGD -0.5213
45 F1 -3.5503 -0.2930 -2.6036 F 1 LGD -0.2129
46 F2 -4.0548 0.7982 -4.4245 F 1 LGD -0.2129
47 F3 -1.9634 0.4908 -3.8799 F 1 LGD -0.2129
48 N4 -0.0413 -2.2807 -5.4466 N.pl3 1 LGD -0.7561
49 C34 -0.2101 -2.9948 -6.7348 C.3 1 LGD 0.2265
50 C35 0.3424 -4.4370 -6.5976 C.3 1 LGD -0.0409
51 C36 0.5056 -2.1954 -7.8598 C.3 1 LGD -0.0871
52 C37 0.2447 -0.6630 -7.7650 C.3 1 LGD 0.1036
53 N5 0.8308 0.1267 -8.8759 N.4 1 LGD -0.6649
54 S3 0.0884 -5.4434 -8.1206 S.3 1 LGD -0.2897
55 C38 0.6066 -7.1058 -7.6824 C.ar 1 LGD 0.0488
56 C39 0.3976 -8.1362 -8.6164 C.ar 1 LGD -0.1240
57 C40 0.7788 -9.4551 -8.3193 C.ar 1 LGD -0.1083
58 C41 1.3728 -9.7531 -7.0835 C.ar 1 LGD -0.1147
59 C42 1.5869 -8.7310 -6.1466 C.ar 1 LGD -0.1083
60 C43 1.2075 -7.4116 -6.4425 C.ar 1 LGD -0.1240
61 C44 0.0850 -0.0893 -10.1384 C.3 1 LGD 0.0651
62 C45 0.6526 0.8517 -11.2282 C.3 1 LGD 0.1140
63 O6 2.0555 0.5575 -11.3772 O.3 1 LGD -0.3803
64 C46 2.8270 0.7928 -10.1826 C.3 1 LGD 0.1140
65 C47 2.2791 -0.1361 -9.0727 C.3 1 LGD 0.0651
66 H1 -0.1004 4.5705 4.2820 H 1 LGD 0.1055
67 H2 0.9906 4.0987 5.5951 H 1 LGD 0.1055
68 H3 -3.1281 4.4717 6.3491 H 1 LGD 0.1055
69 H4 -2.5053 4.7773 4.7193 H 1 LGD 0.1055
70 H5 -2.6170 2.0568 6.1337 H 1 LGD 0.0764
71 H6 -3.6032 2.5862 4.7593 H 1 LGD 0.0764
72 H7 0.0255 1.8173 5.6273 H 1 LGD 0.0764
73 H8 0.5282 2.2275 3.9760 H 1 LGD 0.0764
74 H9 -1.7398 3.9845 8.0932 H 1 LGD 0.1029
75 H10 -0.8278 2.6636 7.3560 H 1 LGD 0.1029
76 H11 -0.3988 6.2902 8.0760 H 1 LGD 0.0469
77 H12 -0.3451 5.5912 9.6862 H 1 LGD 0.0469
78 H13 3.4624 5.9012 9.9953 H 1 LGD 0.0635
79 H14 2.0551 5.1235 10.7094 H 1 LGD 0.0635
80 H15 3.5500 4.3422 8.1731 H 1 LGD 0.0741
81 H16 3.2391 3.3713 9.6007 H 1 LGD 0.0741
82 H17 3.1655 2.7487 6.2531 H 1 LGD 0.1478
83 H18 3.3275 0.4779 5.2613 H 1 LGD 0.1629
84 H19 0.3525 -0.9532 8.0405 H 1 LGD 0.1629
85 H20 0.1922 1.3156 9.0406 H 1 LGD 0.1478
86 H21 -3.4518 2.1280 2.4290 H 1 LGD 0.1424
87 H22 -3.9404 0.2548 0.9105 H 1 LGD 0.1560
88 H23 -0.7509 -2.0380 2.7361 H 1 LGD 0.1560
89 H24 -0.2799 -0.1725 4.2484 H 1 LGD 0.1424
90 H25 -1.1144 -3.3406 1.3977 H 1 LGD 0.3356
91 H26 1.5756 7.6410 7.1929 H 1 LGD 0.0413
92 H27 3.1944 7.2849 7.8228 H 1 LGD 0.0413
93 H28 2.2844 6.0403 6.9438 H 1 LGD 0.0413
94 H29 0.8934 7.3546 10.8736 H 1 LGD 0.0413
95 H30 2.2606 8.1756 10.0970 H 1 LGD 0.0413
96 H31 0.6270 8.3414 9.4232 H 1 LGD 0.0413
97 H32 0.5394 -4.5508 -1.5846 H 1 LGD 0.1663
98 H33 1.3459 -3.5584 -3.6896 H 1 LGD 0.1480
99 H34 -3.4469 -3.1520 -2.4455 H 1 LGD 0.1998
100 H35 0.9483 -2.1027 -5.3585 H 1 LGD 0.3837
101 H36 -1.2760 -3.0708 -6.9776 H 1 LGD 0.1079
102 H37 1.4138 -4.4064 -6.3636 H 1 LGD 0.0747
103 H38 -0.1814 -4.9460 -5.7791 H 1 LGD 0.0747
104 H39 1.5838 -2.3877 -7.7980 H 1 LGD 0.0708
105 H40 0.1685 -2.5699 -8.8341 H 1 LGD 0.0708
106 H41 -0.8312 -0.4801 -7.7386 H 1 LGD 0.1153
107 H42 0.6696 -0.2945 -6.8296 H 1 LGD 0.1153
108 H43 -0.0640 -7.9131 -9.5741 H 1 LGD 0.1311
109 H44 0.6128 -10.2454 -9.0460 H 1 LGD 0.1455
110 H45 1.6671 -10.7730 -6.8523 H 1 LGD 0.1479
111 H46 2.0473 -8.9605 -5.1897 H 1 LGD 0.1455
112 H47 1.3894 -6.6434 -5.6995 H 1 LGD 0.1311
113 H48 0.1957 -1.1282 -10.4531 H 1 LGD 0.1126
114 H49 -0.9730 0.1242 -9.9757 H 1 LGD 0.1126
115 H50 0.1300 0.6796 -12.1771 H 1 LGD 0.0940
116 H51 0.5106 1.9001 -10.9353 H 1 LGD 0.0940
117 H52 3.8836 0.5635 -10.3691 H 1 LGD 0.0940
118 H53 2.7458 1.8427 -9.8737 H 1 LGD 0.0940
119 H54 2.4183 -1.1765 -9.3716 H 1 LGD 0.1126
120 H55 2.8141 0.0406 -8.1380 H 1 LGD 0.1126
121 H56 -0.9126 5.3843 6.3004 H 1 LGD 0.4492
122 H57 0.7289 1.1028 -8.6312 H 1 LGD 0.4425
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 5 7 1
8 2 8 1
9 8 9 1
10 9 10 1
11 10 11 1
12 11 12 1
13 12 13 1
14 13 14 1
15 9 14 2
16 14 15 1
17 15 16 ar
18 16 17 ar
19 17 18 ar
20 18 19 ar
21 19 20 ar
22 15 20 ar
23 7 21 ar
24 21 22 ar
25 22 23 ar
26 23 24 ar
27 24 25 ar
28 7 25 ar
29 23 26 1
30 26 27 am
31 27 28 1
32 28 29 1
33 26 30 2
34 11 31 1
35 11 32 1
36 18 33 1
37 29 34 ar
38 34 35 ar
39 35 36 ar
40 36 37 ar
41 37 38 ar
42 29 38 ar
43 28 39 2
44 28 40 2
45 37 41 1
46 41 42 1
47 41 43 2
48 41 44 2
49 42 45 1
50 42 46 1
51 42 47 1
52 36 48 1
53 48 49 1
54 49 50 1
55 49 51 1
56 51 52 1
57 52 53 1
58 50 54 1
59 54 55 1
60 55 56 ar
61 56 57 ar
62 57 58 ar
63 58 59 ar
64 59 60 ar
65 55 60 ar
66 53 61 1
67 61 62 1
68 62 63 1
69 63 64 1
70 64 65 1
71 53 65 1
72 1 66 1
73 1 67 1
74 3 68 1
75 3 69 1
76 4 70 1
77 4 71 1
78 6 72 1
79 6 73 1
80 8 74 1
81 8 75 1
82 10 76 1
83 10 77 1
84 12 78 1
85 12 79 1
86 13 80 1
87 13 81 1
88 16 82 1
89 17 83 1
90 19 84 1
91 20 85 1
92 21 86 1
93 22 87 1
94 24 88 1
95 25 89 1
96 27 90 1
97 31 91 1
98 31 92 1
99 31 93 1
100 32 94 1
101 32 95 1
102 32 96 1
103 34 97 1
104 35 98 1
105 38 99 1
106 48 100 1
107 49 101 1
108 50 102 1
109 50 103 1
110 51 104 1
111 51 105 1
112 52 106 1
113 52 107 1
114 56 108 1
115 57 109 1
116 58 110 1
117 59 111 1
118 60 112 1
119 61 113 1
120 61 114 1
121 62 115 1
122 62 116 1
123 64 117 1
124 64 118 1
125 65 119 1
126 65 120 1
127 2 121 1
128 53 122 1