@COMMENT
LIGANDBOX_ID = D09940-01
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D09940
NAME = Omadacycline_tosylate_(USAN)_Nuzyra_(TN)
MOLECULAR_FORMULA = C29H40N4O7
MOLECULAR_WEIGHT = 556.660
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 7
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 4
TPSA = 176.6600
HOMO = -13.0604
LUMO = -6.4773
mLOGPA = -5.181
mLOGS = -1.471
mLOGD = 0.587
@MOLECULE
D09940-01
82 85 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 23.9050 -28.1340 -1.3480 C.ar 1 LGD -0.2004
2 C2 24.0170 -26.8260 -0.8590 C.ar 1 LGD -0.1094
3 C3 25.2630 -26.2830 -0.5110 C.ar 1 LGD 0.1437
4 C4 26.4330 -27.0650 -0.6750 C.ar 1 LGD 0.0111
5 C5 26.3400 -28.3960 -1.1510 C.ar 1 LGD -0.2370
6 C6 25.0650 -28.9240 -1.4910 C.ar 1 LGD 0.2169
7 C7 27.8150 -26.4810 -0.3730 C.3 1 LGD -0.0365
8 C8 28.8510 -27.0000 -1.3880 C.3 1 LGD 0.0007
9 C9 28.9430 -28.5360 -1.2660 C.2 1 LGD -0.2401
10 C10 27.6040 -29.2430 -1.2530 C.2 1 LGD 0.6140
11 C11 30.2140 -26.2490 -1.2630 C.3 1 LGD -0.0678
12 C12 31.2490 -27.0850 -0.4750 C.3 1 LGD -0.0665
13 C13 31.4830 -28.4630 -1.1440 C.3 1 LGD 0.0529
14 C14 30.1360 -29.2010 -1.1610 C.2 1 LGD 0.1427
15 C15 32.5790 -26.3960 -0.0300 C.3 1 LGD 0.1334
16 C16 33.1360 -27.3210 1.0500 C.2 1 LGD 0.0762
17 C17 33.1270 -28.6800 0.9020 C.2 1 LGD -0.2106
18 C18 32.6160 -29.2420 -0.4050 C.2 1 LGD 0.5240
19 C19 22.5110 -28.6720 -1.6880 C.3 1 LGD 0.1714
20 N1 21.6540 -28.7030 -0.4840 N.4 1 LGD -0.7394
21 C20 22.0610 -29.5960 0.6240 C.3 1 LGD 0.0955
22 C21 21.3590 -30.9930 0.6100 C.3 1 LGD -0.0735
23 C22 21.8030 -31.7630 1.8840 C.3 1 LGD -0.0994
24 C23 21.7660 -31.8260 -0.6370 C.3 1 LGD -0.0994
25 C24 19.8140 -30.8240 0.6410 C.3 1 LGD -0.0994
26 O1 27.5210 -30.4600 -1.2820 O.2 1 LGD -0.5102
27 O2 30.2370 -30.5390 -1.0550 O.3 1 LGD -0.4395
28 O3 24.9460 -30.2000 -1.9700 O.3 1 LGD -0.5105
29 O4 33.0290 -30.3000 -0.8540 O.2 1 LGD -0.4210
30 O5 31.9100 -28.2980 -2.5010 O.3 1 LGD -0.6001
31 N2 33.5970 -26.1460 -1.1070 N.4 1 LGD -0.6586
32 C25 33.7020 -29.6160 1.9440 C.2 1 LGD 0.6680
33 N3 34.2950 -29.1540 3.1010 N.am 1 LGD -0.6725
34 O6 33.6610 -30.8270 1.8250 O.2 1 LGD -0.5389
35 N4 25.3200 -24.9860 0.0040 N.pl3 1 LGD -0.7527
36 C26 24.6160 -23.8750 -0.6600 C.3 1 LGD 0.2136
37 C27 25.5850 -24.7710 1.4360 C.3 1 LGD 0.2136
38 O7 33.5640 -26.6660 2.1440 O.3 1 LGD -0.4542
39 C28 34.9300 -25.7510 -0.5920 C.3 1 LGD 0.0760
40 C29 33.1720 -25.2260 -2.1840 C.3 1 LGD 0.0760
41 H1 23.1180 -26.2280 -0.7340 H 1 LGD 0.1351
42 H2 27.7980 -25.3860 -0.4270 H 1 LGD 0.0708
43 H3 28.1210 -26.7450 0.6470 H 1 LGD 0.0708
44 H4 28.4590 -26.7650 -2.3870 H 1 LGD 0.0865
45 H5 30.5660 -26.0440 -2.2780 H 1 LGD 0.0616
46 H6 30.0800 -25.2700 -0.7840 H 1 LGD 0.0616
47 H7 30.7360 -27.2950 0.4760 H 1 LGD 0.1097
48 H8 32.3140 -25.4350 0.4320 H 1 LGD 0.1150
49 H9 22.0510 -28.0080 -2.4310 H 1 LGD 0.1173
50 H10 22.5680 -29.6680 -2.1380 H 1 LGD 0.1173
51 H11 21.6010 -27.7600 -0.1260 H 1 LGD 0.4493
52 H12 23.1520 -29.7210 0.6360 H 1 LGD 0.1013
53 H13 21.7890 -29.0970 1.5630 H 1 LGD 0.1013
54 H14 22.8910 -31.9080 1.8960 H 1 LGD 0.0549
55 H15 21.5260 -31.2140 2.7920 H 1 LGD 0.0549
56 H16 21.3300 -32.7520 1.9330 H 1 LGD 0.0549
57 H17 22.8560 -31.8540 -0.7540 H 1 LGD 0.0549
58 H18 21.4110 -32.8610 -0.5480 H 1 LGD 0.0549
59 H19 21.3300 -31.4120 -1.5540 H 1 LGD 0.0549
60 H20 19.3150 -31.7990 0.7210 H 1 LGD 0.0549
61 H21 19.5020 -30.2140 1.4980 H 1 LGD 0.0549
62 H22 19.4470 -30.3370 -0.2720 H 1 LGD 0.0549
63 H23 31.1840 -30.7750 -1.0300 H 1 LGD 0.4529
64 H24 25.8230 -30.6260 -1.9080 H 1 LGD 0.4824
65 H25 32.2050 -29.1710 -2.8160 H 1 LGD 0.4533
66 H26 34.3520 -28.1600 3.2720 H 1 LGD 0.3371
67 H27 34.6630 -29.8120 3.7720 H 1 LGD 0.3371
68 H28 23.5980 -23.7760 -0.2620 H 1 LGD 0.0407
69 H29 25.1550 -22.9330 -0.4970 H 1 LGD 0.0407
70 H30 24.5600 -24.0520 -1.7410 H 1 LGD 0.0407
71 H31 26.3240 -23.9710 1.5680 H 1 LGD 0.0407
72 H32 24.6600 -24.4960 1.9590 H 1 LGD 0.0407
73 H33 25.9840 -25.6860 1.8930 H 1 LGD 0.0407
74 H34 33.5240 -25.7110 1.9590 H 1 LGD 0.4452
75 H35 35.3500 -26.5310 0.0550 H 1 LGD 0.1103
76 H36 35.6340 -25.6050 -1.4210 H 1 LGD 0.1103
77 H37 34.8620 -24.8150 -0.0230 H 1 LGD 0.1103
78 H38 32.5040 -25.7330 -2.8850 H 1 LGD 0.1103
79 H39 32.6700 -24.3430 -1.7670 H 1 LGD 0.1103
80 H40 34.0370 -24.8880 -2.7690 H 1 LGD 0.1103
81 H41 20.7559 -29.0657 -0.7329 H 1 LGD 0.4493
82 H42 33.9655 -27.0226 -1.4165 H 1 LGD 0.4529
@BOND
1 1 2 ar
2 2 3 ar
3 3 4 ar
4 4 5 ar
5 5 6 ar
6 1 6 ar
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 5 10 1
12 8 11 1
13 11 12 1
14 12 13 1
15 13 14 1
16 9 14 2
17 12 15 1
18 15 16 1
19 16 17 2
20 17 18 1
21 13 18 1
22 1 19 1
23 19 20 1
24 20 21 1
25 21 22 1
26 22 23 1
27 22 24 1
28 22 25 1
29 10 26 2
30 14 27 1
31 6 28 1
32 18 29 2
33 13 30 1
34 15 31 1
35 17 32 1
36 32 33 am
37 32 34 2
38 3 35 1
39 35 36 1
40 35 37 1
41 16 38 1
42 31 39 1
43 31 40 1
44 2 41 1
45 7 42 1
46 7 43 1
47 8 44 1
48 11 45 1
49 11 46 1
50 12 47 1
51 15 48 1
52 19 49 1
53 19 50 1
54 20 51 1
55 21 52 1
56 21 53 1
57 23 54 1
58 23 55 1
59 23 56 1
60 24 57 1
61 24 58 1
62 24 59 1
63 25 60 1
64 25 61 1
65 25 62 1
66 27 63 1
67 28 64 1
68 30 65 1
69 33 66 1
70 33 67 1
71 36 68 1
72 36 69 1
73 36 70 1
74 37 71 1
75 37 72 1
76 37 73 1
77 38 74 1
78 39 75 1
79 39 76 1
80 39 77 1
81 40 78 1
82 40 79 1
83 40 80 1
84 20 81 1
85 31 82 1