@COMMENT
LIGANDBOX_ID = D09940-02
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D09940
NAME = Omadacycline_tosylate_(USAN)_Nuzyra_(TN)
MOLECULAR_FORMULA = C29H40N4O7
MOLECULAR_WEIGHT = 556.660
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 7
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 4
TPSA = 176.6600
HOMO = -13.0604
LUMO = -6.4773
mLOGPA = -5.181
mLOGS = -1.471
mLOGD = 0.587
@MOLECULE
D09940-02
82 85 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 2.0306 -0.0185 -3.2721 C.ar 1 LGD -0.2053
2 C2 2.2098 1.2950 -2.8190 C.ar 1 LGD -0.1078
3 C3 1.4815 1.7875 -1.7243 C.ar 1 LGD 0.1458
4 C4 0.5342 0.9502 -1.0818 C.ar 1 LGD 0.0119
5 C5 0.3494 -0.3850 -1.5211 C.ar 1 LGD -0.2367
6 C6 1.1088 -0.8600 -2.6228 C.ar 1 LGD 0.2159
7 C7 -0.3205 1.4757 0.0749 C.3 1 LGD -0.0357
8 C8 -1.7427 0.8853 0.0140 C.3 1 LGD -0.0004
9 C9 -1.6562 -0.6504 0.1274 C.2 1 LGD -0.2380
10 C10 -0.6281 -1.2894 -0.7807 C.2 1 LGD 0.6139
11 C11 -2.6991 1.5605 1.0458 C.3 1 LGD -0.0704
12 C12 -2.8720 0.6867 2.3075 C.3 1 LGD -0.0709
13 C13 -3.4386 -0.7107 1.9451 C.3 1 LGD 0.0497
14 C14 -2.4351 -1.3751 0.9904 C.2 1 LGD 0.1357
15 C15 -3.6060 1.3217 3.5243 C.3 1 LGD 0.1266
16 C16 -3.2648 0.4037 4.6938 C.2 1 LGD 0.0807
17 C17 -3.2763 -0.9570 4.5630 C.2 1 LGD -0.2137
18 C18 -3.7237 -1.5328 3.2400 C.2 1 LGD 0.5268
19 C19 2.8389 -0.5184 -4.4666 C.3 1 LGD 0.1715
20 N1 4.2865 -0.4208 -4.1808 N.4 1 LGD -0.7415
21 C20 4.7306 -1.3181 -3.0899 C.3 1 LGD 0.1057
22 C21 5.3163 -2.6659 -3.6082 C.3 1 LGD -0.0748
23 C22 5.8712 -3.4380 -2.3825 C.3 1 LGD -0.0994
24 C23 4.2234 -3.5306 -4.2925 C.3 1 LGD -0.0994
25 C24 6.4790 -2.4062 -4.6068 C.3 1 LGD -0.0994
26 O1 -0.5454 -2.5006 -0.9019 O.2 1 LGD -0.5093
27 O2 -2.3788 -2.7148 1.0893 O.3 1 LGD -0.4392
28 O3 0.9540 -2.1375 -3.0831 O.3 1 LGD -0.5107
29 O4 -4.2607 -2.6262 3.1669 O.2 1 LGD -0.4180
30 O5 -4.6918 -0.5765 1.2614 O.3 1 LGD -0.6124
31 N2 -5.0887 1.4171 3.3806 N.4 1 LGD -0.6615
32 C25 -2.9612 -1.8945 5.7068 C.2 1 LGD 0.6692
33 N3 -2.6509 -1.4353 6.9684 N.am 1 LGD -0.6718
34 O6 -2.9505 -3.1040 5.5726 O.2 1 LGD -0.5404
35 N4 1.7161 3.0935 -1.2863 N.pl3 1 LGD -0.7567
36 C26 1.7226 4.2230 -2.2312 C.3 1 LGD 0.2151
37 C27 2.4573 3.3352 -0.0371 C.3 1 LGD 0.2151
38 O7 -2.9080 1.0687 5.8048 O.3 1 LGD -0.4564
39 C28 -5.7354 1.8186 4.6504 C.3 1 LGD 0.0821
40 C29 -5.5134 2.4172 2.3797 C.3 1 LGD 0.0821
41 H1 2.9307 1.9375 -3.3167 H 1 LGD 0.1356
42 H2 -0.4006 2.5690 0.0386 H 1 LGD 0.0711
43 H3 0.1485 1.2227 1.0343 H 1 LGD 0.0711
44 H4 -2.1408 1.1272 -0.9809 H 1 LGD 0.0861
45 H5 -3.6606 1.7192 0.5486 H 1 LGD 0.0619
46 H6 -2.3329 2.5561 1.3274 H 1 LGD 0.0619
47 H7 -1.8443 0.5240 2.6640 H 1 LGD 0.1119
48 H8 -3.2062 2.3216 3.7024 H 1 LGD 0.1147
49 H9 2.6150 0.0919 -5.3436 H 1 LGD 0.1175
50 H10 2.5863 -1.5527 -4.7024 H 1 LGD 0.1175
51 H11 4.4863 0.5326 -3.9132 H 1 LGD 0.4475
52 H12 3.8994 -1.5048 -2.4071 H 1 LGD 0.1016
53 H13 5.5147 -0.8020 -2.5328 H 1 LGD 0.1016
54 H14 5.0766 -3.6402 -1.6527 H 1 LGD 0.0547
55 H15 6.6547 -2.8593 -1.8759 H 1 LGD 0.0547
56 H16 6.3061 -4.4000 -2.6834 H 1 LGD 0.0547
57 H17 3.3486 -3.6451 -3.6401 H 1 LGD 0.0547
58 H18 4.6049 -4.5340 -4.5219 H 1 LGD 0.0547
59 H19 3.8919 -3.0822 -5.2370 H 1 LGD 0.0547
60 H20 6.9629 -3.3476 -4.8977 H 1 LGD 0.0547
61 H21 7.2438 -1.7584 -4.1593 H 1 LGD 0.0547
62 H22 6.1198 -1.9225 -5.5239 H 1 LGD 0.0547
63 H23 -3.0189 -3.0000 1.7668 H 1 LGD 0.4546
64 H24 0.3434 -2.5976 -2.4754 H 1 LGD 0.4827
65 H25 -4.9744 -1.4676 0.9861 H 1 LGD 0.4619
66 H26 -2.6273 -0.4430 7.1510 H 1 LGD 0.3370
67 H27 -2.4397 -2.0980 7.6994 H 1 LGD 0.3370
68 H28 2.7341 4.3868 -2.6240 H 1 LGD 0.0408
69 H29 1.3826 5.1380 -1.7299 H 1 LGD 0.0408
70 H30 1.0437 4.0209 -3.0693 H 1 LGD 0.0408
71 H31 1.9488 4.1013 0.5615 H 1 LGD 0.0408
72 H32 3.4785 3.6708 -0.2581 H 1 LGD 0.0408
73 H33 2.5144 2.4152 0.5583 H 1 LGD 0.0408
74 H34 -2.9441 2.0230 5.6179 H 1 LGD 0.4469
75 H35 -5.5377 1.0727 5.4224 H 1 LGD 0.1076
76 H36 -6.8141 1.8995 4.5037 H 1 LGD 0.1076
77 H37 -5.3431 2.7853 4.9720 H 1 LGD 0.1076
78 H38 -5.3430 2.0297 1.3761 H 1 LGD 0.1076
79 H39 -4.9559 3.3449 2.5198 H 1 LGD 0.1076
80 H40 -6.5811 2.6159 2.4915 H 1 LGD 0.1076
81 H41 4.8134 -0.6344 -5.0159 H 1 LGD 0.4475
82 H42 -5.4463 0.5113 3.1024 H 1 LGD 0.4717
@BOND
1 1 2 ar
2 2 3 ar
3 3 4 ar
4 4 5 ar
5 5 6 ar
6 1 6 ar
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 5 10 1
12 8 11 1
13 11 12 1
14 12 13 1
15 13 14 1
16 9 14 2
17 12 15 1
18 15 16 1
19 16 17 2
20 17 18 1
21 13 18 1
22 1 19 1
23 19 20 1
24 20 21 1
25 21 22 1
26 22 23 1
27 22 24 1
28 22 25 1
29 10 26 2
30 14 27 1
31 6 28 1
32 18 29 2
33 13 30 1
34 15 31 1
35 17 32 1
36 32 33 am
37 32 34 2
38 3 35 1
39 35 36 1
40 35 37 1
41 16 38 1
42 31 39 1
43 31 40 1
44 2 41 1
45 7 42 1
46 7 43 1
47 8 44 1
48 11 45 1
49 11 46 1
50 12 47 1
51 15 48 1
52 19 49 1
53 19 50 1
54 20 51 1
55 21 52 1
56 21 53 1
57 23 54 1
58 23 55 1
59 23 56 1
60 24 57 1
61 24 58 1
62 24 59 1
63 25 60 1
64 25 61 1
65 25 62 1
66 27 63 1
67 28 64 1
68 30 65 1
69 33 66 1
70 33 67 1
71 36 68 1
72 36 69 1
73 36 70 1
74 37 71 1
75 37 72 1
76 37 73 1
77 38 74 1
78 39 75 1
79 39 76 1
80 39 77 1
81 40 78 1
82 40 79 1
83 40 80 1
84 20 81 1
85 31 82 1