@COMMENT
LIGANDBOX_ID = D09940-03
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D09940
NAME = Omadacycline_tosylate_(USAN)_Nuzyra_(TN)
MOLECULAR_FORMULA = C29H40N4O7
MOLECULAR_WEIGHT = 556.660
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 7
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 4
TPSA = 176.6600
HOMO = -13.0604
LUMO = -6.4773
mLOGPA = -5.181
mLOGS = -1.471
mLOGD = 0.587
@MOLECULE
D09940-03
82 85 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -3.5893 -0.4174 -1.2734 C.ar 1 LGD -0.2041
2 C2 -3.5222 0.8942 -0.7853 C.ar 1 LGD -0.1089
3 C3 -2.2961 1.4615 -0.4114 C.ar 1 LGD 0.1507
4 C4 -1.1064 0.7063 -0.5583 C.ar 1 LGD 0.0057
5 C5 -1.1542 -0.6212 -1.0497 C.ar 1 LGD -0.2326
6 C6 -2.4114 -1.1778 -1.4019 C.ar 1 LGD 0.2158
7 C7 0.2490 1.3166 -0.2154 C.3 1 LGD -0.0379
8 C8 1.3259 0.8525 -1.2115 C.3 1 LGD 0.0052
9 C9 1.4544 -0.6779 -1.1296 C.2 1 LGD -0.2480
10 C10 0.1367 -1.4253 -1.1537 C.2 1 LGD 0.6147
11 C11 2.6536 1.6417 -1.0006 C.3 1 LGD -0.0733
12 C12 3.7204 0.8256 -0.2389 C.3 1 LGD -0.0600
13 C13 3.9839 -0.5173 -0.9874 C.3 1 LGD 0.0659
14 C14 2.6659 -1.3038 -1.0380 C.2 1 LGD 0.1441
15 C15 5.1081 1.4862 0.0667 C.3 1 LGD 0.1149
16 C16 5.6656 0.5644 1.1751 C.2 1 LGD 0.0885
17 C17 5.6816 -0.7871 0.9861 C.2 1 LGD -0.2045
18 C18 5.1625 -1.3018 -0.3282 C.2 1 LGD 0.5414
19 C19 -4.9475 -1.0065 -1.6384 C.3 1 LGD 0.1718
20 N1 -5.8404 -0.9632 -0.4604 N.4 1 LGD -0.7418
21 C20 -5.3737 -1.8205 0.6529 C.3 1 LGD 0.1054
22 C21 -6.0641 -3.2156 0.6727 C.3 1 LGD -0.0752
23 C22 -5.5708 -3.9654 1.9375 C.3 1 LGD -0.0994
24 C23 -5.6900 -4.0488 -0.5829 C.3 1 LGD -0.0994
25 C24 -7.6075 -3.0512 0.7525 C.3 1 LGD -0.0994
26 O1 0.0904 -2.6425 -1.2236 O.2 1 LGD -0.5082
27 O2 2.8052 -2.6398 -0.9764 O.3 1 LGD -0.4389
28 O3 -2.5044 -2.4555 -1.8785 O.3 1 LGD -0.5089
29 O4 5.5946 -2.3239 -0.8365 O.2 1 LGD -0.4182
30 O5 4.3976 -0.2361 -2.3308 O.3 1 LGD -0.5853
31 N2 5.1091 2.9583 0.3762 N.4 1 LGD -0.6742
32 C25 6.2462 -1.7624 1.9929 C.2 1 LGD 0.6749
33 N3 6.8758 -1.3452 3.1458 N.am 1 LGD -0.6724
34 O6 6.1745 -2.9674 1.8380 O.2 1 LGD -0.5413
35 N4 -2.2785 2.7595 0.1051 N.pl3 1 LGD -0.7693
36 C26 -2.9309 3.8751 -0.5990 C.3 1 LGD 0.2217
37 C27 -1.9770 3.0056 1.5257 C.3 1 LGD 0.2217
38 O7 5.9710 1.1455 2.3458 O.3 1 LGD -0.4564
39 C28 4.8076 3.7964 -0.8105 C.3 1 LGD 0.0747
40 C29 6.4592 3.4754 0.7197 C.3 1 LGD 0.0747
41 H1 -4.4348 1.4739 -0.6788 H 1 LGD 0.1353
42 H2 0.2034 2.4117 -0.2465 H 1 LGD 0.0655
43 H3 0.5396 1.0376 0.8056 H 1 LGD 0.0655
44 H4 0.9646 1.1089 -2.2167 H 1 LGD 0.0881
45 H5 3.0437 1.9523 -1.9784 H 1 LGD 0.0537
46 H6 2.4332 2.5562 -0.4382 H 1 LGD 0.0537
47 H7 3.2592 0.5894 0.7311 H 1 LGD 0.0886
48 H8 5.7301 1.3686 -0.8229 H 1 LGD 0.1409
49 H9 -5.4001 -0.4240 -2.4431 H 1 LGD 0.1183
50 H10 -4.8473 -2.0372 -1.9800 H 1 LGD 0.1183
51 H11 -5.8774 -0.0077 -0.1346 H 1 LGD 0.4476
52 H12 -4.2895 -1.9367 0.5974 H 1 LGD 0.1015
53 H13 -5.6100 -1.3119 1.5895 H 1 LGD 0.1015
54 H14 -4.4813 -4.0981 1.9152 H 1 LGD 0.0547
55 H15 -5.8236 -3.4075 2.8486 H 1 LGD 0.0547
56 H16 -6.0304 -4.9594 2.0135 H 1 LGD 0.0547
57 H17 -4.6013 -4.0943 -0.7130 H 1 LGD 0.0547
58 H18 -6.0616 -5.0779 -0.4950 H 1 LGD 0.0547
59 H19 -6.1270 -3.6190 -1.4926 H 1 LGD 0.0547
60 H20 -8.0999 -4.0252 0.8693 H 1 LGD 0.0547
61 H21 -7.8915 -2.4246 1.6077 H 1 LGD 0.0547
62 H22 -8.0082 -2.5845 -0.1563 H 1 LGD 0.0547
63 H23 3.7568 -2.8486 -0.9445 H 1 LGD 0.4576
64 H24 -1.6141 -2.8540 -1.8313 H 1 LGD 0.4835
65 H25 4.5429 -1.0884 -2.7799 H 1 LGD 0.4556
66 H26 6.9647 -0.3589 3.3408 H 1 LGD 0.3344
67 H27 7.2431 -2.0315 3.7879 H 1 LGD 0.3344
68 H28 -3.9558 4.0111 -0.2319 H 1 LGD 0.0395
69 H29 -2.3675 4.8034 -0.4404 H 1 LGD 0.0395
70 H30 -2.9622 3.6759 -1.6778 H 1 LGD 0.0395
71 H31 -1.2037 3.7785 1.6187 H 1 LGD 0.0395
72 H32 -2.8794 3.3330 2.0570 H 1 LGD 0.0395
73 H33 -1.6061 2.0893 2.0023 H 1 LGD 0.0395
74 H34 5.7240 2.0834 2.2843 H 1 LGD 0.4160
75 H35 3.7651 3.7164 -1.1062 H 1 LGD 0.1131
76 H36 5.0047 4.8445 -0.5758 H 1 LGD 0.1131
77 H37 5.4423 3.4927 -1.6450 H 1 LGD 0.1131
78 H38 6.8331 3.0533 1.6505 H 1 LGD 0.1131
79 H39 7.1567 3.2341 -0.0848 H 1 LGD 0.1131
80 H40 6.4127 4.5604 0.8349 H 1 LGD 0.1131
81 H41 -6.7729 -1.2464 -0.7265 H 1 LGD 0.4476
82 H42 4.4490 3.1661 1.1147 H 1 LGD 0.4503
@BOND
1 1 2 ar
2 2 3 ar
3 3 4 ar
4 4 5 ar
5 5 6 ar
6 1 6 ar
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 5 10 1
12 8 11 1
13 11 12 1
14 12 13 1
15 13 14 1
16 9 14 2
17 12 15 1
18 15 16 1
19 16 17 2
20 17 18 1
21 13 18 1
22 1 19 1
23 19 20 1
24 20 21 1
25 21 22 1
26 22 23 1
27 22 24 1
28 22 25 1
29 10 26 2
30 14 27 1
31 6 28 1
32 18 29 2
33 13 30 1
34 15 31 1
35 17 32 1
36 32 33 am
37 32 34 2
38 3 35 1
39 35 36 1
40 35 37 1
41 16 38 1
42 31 39 1
43 31 40 1
44 2 41 1
45 7 42 1
46 7 43 1
47 8 44 1
48 11 45 1
49 11 46 1
50 12 47 1
51 15 48 1
52 19 49 1
53 19 50 1
54 20 51 1
55 21 52 1
56 21 53 1
57 23 54 1
58 23 55 1
59 23 56 1
60 24 57 1
61 24 58 1
62 24 59 1
63 25 60 1
64 25 61 1
65 25 62 1
66 27 63 1
67 28 64 1
68 30 65 1
69 33 66 1
70 33 67 1
71 36 68 1
72 36 69 1
73 36 70 1
74 37 71 1
75 37 72 1
76 37 73 1
77 38 74 1
78 39 75 1
79 39 76 1
80 39 77 1
81 40 78 1
82 40 79 1
83 40 80 1
84 20 81 1
85 31 82 1